Published 2011
Table of Contents:
“…Microbial Ecology in the Age of Metagenomics / Jianping Xu -- The Enduring Legacy of Small Subunit rRNA in Microbiology / Susannah G
Tringe, Philip Hugenholtz -- Pitfalls of PCR-Based rRNA Gene Sequence Analysis: An Update on Some Parameters / Erko Stackebrandt -- Empirical Testing of 16S PCR Primer Pairs Reveals Variance in Target Specificity and Efficacy not Suggested by Analysis / Sergio E Morales, William E Holben -- The Impact of Next-Generation Sequencing Technologies on Metagenomics / George M Weinstock -- Accuracy and Quality of Massively Parallel DNA Pyrosequencing / Susan M Huse, David B Mark Welch -- Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes / Jonathan A Eisen -- A Comparison of Random Sequence Reads Versus 16S rDNA Sequences for Estimating the Biodiversity of a Metagenomic Sample / Chaysavanh Manichanh, Charles E Chapple, Lionel Frangeul, Karine Gloux, Roderic Guigo, Joel Dore -- Metagenomic Libraries for Functional Screening / Trine Aakvik, Rahmi Lale, Mark Liles, Svein Valla -- GC Fractionation Allows Comparative Total Microbial Community Analysis, Enhances Diversity Assessment, and Facilitates Detection of Minority Populations of Bacteria / William E Holben -- Enriching Plant Microbiota for a Metagenomic Library Construction / Ying Zeng, Hao-Xin Wang, Zhao-Liang Geng, Yue-Mao Shen -- Towards Automated Phylogenomic Inference / Martin Wu, Jonathan A Eisen -- Integron First Gene Cassettes: A Target to Find Adaptive Genes in Metagenomes / Lionel Huang, Christine Cagnon -- High-Resolution Metagenomics: Assessing Specific Functional Types in Complex Microbial Communities / Ludmila Chistoserdova -- Gene-Targeted Metagenomics (GT Metagenomics) to Explore the Extensive Diversity of Genes of Interest in Microbial Communities / Shoko Iwai, Benli Chai, Ederson da C Jesus, C Ryan Penton, Tae Kwon Lee, James R Cole, James M Tiedje -- Phylogenetic Screening of Metagenomic Libraries Using Homing Endonuclease Restriction and Marker Insertion / Torsten Thomas, Staffan Kjelleberg, Pui Yi Yung -- ArrayOme- and tRNAcc-Facilitated Mobilome Discovery: Comparative Genomics Approaches for Identifying Rich Veins of Bacterial Novel DNA Sequences / Hong-Yu Ou, Kumar Rajakumar -- Sequence-Based Characterization of Microbiomes by Serial Analysis of Ribosomal Sequence Tags (SARST) / Zhongtang Yu, Mark Morrison -- Consortia and Databases. …”
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