Algorithms in computational molecular biology : techniques, approaches, and applications /
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| Other Authors: | , |
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| Format: | Book |
| Language: | English |
| Published: |
Hoboken, N.J. :
John Wiley & Sons,
c2011.
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| Series: | Wiley series on bioinformatics.
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| Subjects: |
Table of Contents:
- pt. 1. Strings processing and application to biological sequences
- String data structures for computational molecular biology / Christos Makris and Evangelos Theodoridis
- Efficient restricted-case algorithms for problems in computational biology / Patricia A. Evans and H. Todd Wareham
- Finite automata in pattern matching / Jan Holub
- New developments in processing of degenerate sequences / Pavlos Antoniou and Costas S. Iliopoulos
- Exact search algorithms for biological sequences / Eric Rivals, Leena Salmela, and Jorma Tarhio
- Algorithmic aspects of arc-annotated sequences / Guillaume Blin, Maxime Crochemore, and Stéphane Vialette
- Algorithmic issues in DNA barcoding problems / Bhaskar DasGupta, Ming-Yang Kao, and Ion Măndoiu
- Recent advances in weighted DNA sequences / Manolis Christodoulakis and Costas S. Iliopoulos
- DNA computing for subgraph isomorphism problem and related problems / Sun-Yuan Hsieh, Chao-Wen Huang, and Hsin-Hung Chou
- pt. 2. Analysis of biological sequences
- Graphs in bioinformatics / Elsa Chacko and Shoba Ranganathan
- A flexible data store for managing bioinformatics data / Bassam A. Alqaralleh ... [et al.]
- Algorithms for the alignment of biological sequences / Ahmed Mokaddem and Mourad Elloumi
- Algorithms for local structural alignment and structural motif identification / Sanguthevar Rajasekaran, Vamsi Kundeti, and Martin Schiller
- Evolution of the clustal family of multiple sequence alignment programs / Mohamed Radhouene Aniba and Julie Thompson
- Filters and seeds approaches for fast homology searches in large datasets / Nadia Pisanti, Mathieu Giraud, and Pierre Peterlongo
- Novel combinatorial and information-theoretic alignment-free distances for biological data mining / Chiara Epifanio ... [et al.]
- In silico methods for the analysis of metabolites and drug molecules / Varun Khanna and Shoba Ranganathan
- pt. 3. Motif finding and structure prediction
- Motif finding algorithms in biological sequences / Tarek El Falah, Mourad Elloumi, and Thierry Lecroq
- Computational characterization of regulatory regions / Enrique Blanco
- Algorithmic issues in the analysis of chip-seq data / Federico Zambelli and Giulio Pavesi
- Approaches and methods for operon prediction based on machine learning techniques / Yan Wang ... [et al.]
- Protein function prediction with data-mining techniques / Xing-Ming Zhao and Luonan Chen
- Protein domain boundary prediction / Paul D. Yoo, Bing Bing Zhou, and Albert Y. Zomaya
- An introduction to RNA structure and pseudoknot prediction / Jana Sperschneider and Amitava Datta
- pt. 4. Phylogeny reconstruction
- Phylogenetic search algorithms for maximum likelihood / Alexandros Stamatakis
- Heuristic methods for phylogenetic reconstruction with maximum parsimony / Adrien Goëffon, Jean-Michel Richer, and Jin-Kao Hao
- Maximum entropy method for composition vector method / Raymond H.-F. Chan, Roger W. Wang, and Jeff C.-F. Wong
- pt. 5. Microarray data analysis
- Microarray gene expression data analysis / Alan Wee-Chung Liew and Xiangchao Gan
- Biclustering of microarray data / Wassim Ayadi and Mourad Elloumi
- Computational models for condition-specific gene and pathway inference / Yu-Qing Qiu ... [et al.]
- Heterogeneity of differential expression in cancer studies : algorithms and methods / Radha Krishna Murthy Karuturi
- pt. 6. Analysis of genomes
- Comparative genomics : algorithms and applications / Xiao Yang and Srinivas Aluru
- Advances in genome rearrangement algorithms / Masud Hasan and M. Sohel Rahman
- Computing genomic distances : an algorithmic viewpoint / Guillaume Fertin and Irena Rusu
- Wavelet algorithms for DNA analysis / Carlo Cattani
- Haplotype inference models and algorithms / Ling-Yun Wu
- pt. 7. Analysis of biological networks
- Untangling biological networks using bioinformatics / Gaurav Kumar, Adrian P. Cootes, and Shoba Ranganathan
- Probabilistic approaches for investigating biological networks / Jérémie Bourdon and Damien Eveillard
- Modeling and analysis of biological networks with model checking / Dragan Bošnački ... [et al.]
- Reverse engineering of molecular networks from a common combinatorial approach / Bhaskar DasGupta, Paola Vera-Licona, and Eduardo Sontag
- Unsupervised learning for gene regulation network inference from expression data : a review / Mohamed Elati and Céline Rouveirol
- Approaches to construction and analysis of microRNA-mediated networks / Ilana Lichtenstein ... [et al.].
